1. Blowing up and down in 4-manifolds , UC Berkeley PhD thesis, 1977
2. Slice knots and property R (with R. Kirby), Invent. Math. 45 (1978) 57–59
3. Bordism of diffeomorphisms, Topology 18 (1979) 173–175
4. On 4-manifolds with singular torus ations, Math. Ann. 256 (1981) 255–276
5. Tori in the diffeomorphism groups of simply connected 4-manifolds , Math. Proc. Camb. Phil. Soc. 91 (1982) 305–314
6. Algebraic knots are algebraically dependent (with C. Livingston), Proc. Amer. Math. Soc. 87 (1983) 179–180
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8. 4-dimensional oriented bordism, Contemp. Math. 35 (1984) 399–405
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10. The Smale invariant of a knot (with J. Hughes), Comment. Mat. Helv. 60 (1985) 615–627
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14. Evaluations of the 3-manifold invariants of Witten and Reshetikhin-Turaev for sl(2,C) (with R. Kirby), London Math. Soc. Lecture Notes 151 (1990) 101–114
15. The 3-manifold invariants of Witten and Reshetikhin-Turaev for sl(2,C) (with R. Kirby), Invent. Math. 105 (1991) 473–545
16. Templates and framed braids (with N. Tufillaro), Phys. Rev. A 44 (1991) 3419–3422
17. Quantum invariants of lens spaces and a Dehn surgery formula (with R. Kirby), Abstracts Amer. Math. Soc. 12 (1991) 435
18. Relative Rotation Rate Package (with A. Lorentz and N. Tufillaro), Appendix in "An Experimental Approach to Nonlinear Dynamics and Chaos" by N. Tufillaro, T. Abbott and J. Reilly, Addison-Wesley (1992) 314–322
19. Quantum invariants at the sixth root of unity (with R. Kirby and X. Zhang), Commun. Math. Phys. 151 (1993) 607–617
20. Dedekind sums, m-invariants and the signature cocycle (with R. Kirby), Math. Ann. 299 (1994) 231–267
21. The coloured Jones function (with H.R. Morton), Commun. Math. Phys. 169 (1995) 501–520
22. Canonical framings for 3-manifolds (with R. Kirby), Turk. J. of Math. 23 (1999) 89–115
23. The E8-manifold, singular fibers and handlebody decompositions (with R. Kirby), Proc. of the Kirby Fest, Geom. & Top. Monographs 2 (1999) 233–258
24. Finite type invariants of 3-manifolds (with T. Cochran), Invent. Math. 140 (2000) 45–100
25. Quantum cyclotomic orders of 3-manifolds (with T. Cochran), Topology 40 (2001) 95–125
26. A geometric interpretation of Milnor's triple linking numbers (with B. Mellor), Alg. & Geom. Topology 3 (2003) 557–568
27. Local surgery formulas for quantum invariants and the Arf invariant (with R. Kirby), Proc. of the Casson Fest, Geom. & Top. Monographs 7 (2004) 213–233
28. The nonuniqueness of Chekanov polynomials of Legendrian knots (with S. Shrestha), Geom. & Top. 9 (2005) 1221–1252
29. A topological menagerie, Amer. Math. Monthly 113 (2006) 348–351
30. A non-smoothable four-manifold with infinite cyclic fundamental group (with S. Friedl, I. Hambleton and P. Teichner), Int. Math. Res. Not. 2007 (rnm31)
31. Triple linking numbers, ambiguous Hopf invariants and integral formulas for three-component links (with D. DeTurck, H. Gluck, RT. Komendarczyk, C. Shonkwiler and S. Vela-Vick), DoCarmo Festschrift, Matematica Contemporanea 34 (2009) 251–283
32. The Milnor degree of a 3-manifold (with T. Cochran), Journal of Topology 3 (2010) 405–423